IL_7OHS_040

3D structure

PDB id

7OHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.38 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7OHS|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHS_040 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.3536

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7OHS|1|1|G|1234
7OHS|1|1|U|1235
7OHS|1|1|G|1236
7OHS|1|1|G|1237
7OHS|1|1|C|1238
*
7OHS|1|1|G|1250
7OHS|1|1|A|1251
7OHS|1|1|A|1252
7OHS|1|1|U|1253
7OHS|1|1|C|1254

Current chains

Chain 1

25S rRNA

Nearby chains

Chain r

Ribosome biogenesis protein NSA2