IL_7OHS_046

3D structure

PDB id

7OHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.38 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHS_046 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1648

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7OHS|1|1|G|1444
7OHS|1|1|U|1445
7OHS|1|1|A|1446
7OHS|1|1|G|1447
7OHS|1|1|U|1448
7OHS|1|1|A|1449
7OHS|1|1|G|1450
*
7OHS|1|1|C|2354
7OHS|1|1|G|2355
7OHS|1|1|A|2356
7OHS|1|1|A|2357
7OHS|1|1|A|2358
7OHS|1|1|C|2359

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain P

60S ribosomal protein L17-A