IL_7OHU_015

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUUU*AUUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHU_015 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.2485

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7OHU|1|1|G|445
7OHU|1|1|U|446
7OHU|1|1|U|447
7OHU|1|1|U|448
7OHU|1|1|U|449
*
7OHU|1|1|A|485
7OHU|1|1|U|486
7OHU|1|1|U|487
7OHU|1|1|U|488
7OHU|1|1|C|489

Current chains

Chain 1

25S rRNA

Nearby chains