IL_7OHU_025

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAG*CUAGUAC

Length

12 nucleotides

Bulged bases

7OHU|1|1|A|933

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHU_025 not in the Motif Atlas

Homologous match to IL_5TBW_028

Geometric discrepancy: 0.3655

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7OHU|1|1|G|805
7OHU|1|1|A|806
7OHU|1|1|A|807
7OHU|1|1|A|808
7OHU|1|1|G|809
*
7OHU|1|1|C|931
7OHU|1|1|U|932
7OHU|1|1|A|933
7OHU|1|1|G|934
7OHU|1|1|U|935
7OHU|1|1|A|936
7OHU|1|1|C|938

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain j

60S ribosomal protein L37-A