IL_7OHU_065

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUA*UUAAC

Length

8 nucleotides

Bulged bases

7OHU|1|1|A|3375, 7OHU|1|1|A|3376

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHU_065 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.5427

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7OHU|1|1|G|3328
7OHU|1|1|U|3329
7OHU|1|1|A|3330
*
7OHU|1|1|U|3373
7OHU|1|1|U|3374
7OHU|1|1|A|3375
7OHU|1|1|A|3376
7OHU|1|1|C|3378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain u

Ribosome biogenesis protein RLP24