IL_7OHY_044

3D structure

PDB id

7OHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHY_044 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1652

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7OHY|1|1|G|1444
7OHY|1|1|U|1445
7OHY|1|1|A|1446
7OHY|1|1|G|1447
7OHY|1|1|U|1448
7OHY|1|1|A|1449
7OHY|1|1|G|1450
*
7OHY|1|1|C|2354
7OHY|1|1|G|2355
7OHY|1|1|A|2356
7OHY|1|1|A|2357
7OHY|1|1|A|2358
7OHY|1|1|C|2359

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain P

60S ribosomal protein L17-A