IL_7OHY_045
3D structure
- PDB id
- 7OHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 7OHY|1|1|A|3142, 7OHY|1|1|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHY_045 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.2017
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7OHY|1|1|C|3004
7OHY|1|1|A|3005
7OHY|1|1|A|3006
7OHY|1|1|U|3007
*
7OHY|1|1|A|3139
7OHY|1|1|G|3140
7OHY|1|1|A|3141
7OHY|1|1|A|3142
7OHY|1|1|C|3143
7OHY|1|1|G|3144
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
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