IL_7OHY_048

3D structure

PDB id

7OHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

7OHY|1|1|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHY_048 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.2978

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

7OHY|1|1|U|3047
7OHY|1|1|A|3048
7OHY|1|1|A|3049
7OHY|1|1|U|3050
7OHY|1|1|U|3051
*
7OHY|1|1|A|3091
7OHY|1|1|C|3092
7OHY|1|1|C|3093
7OHY|1|1|A|3094

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23-A

Chain u

Ribosome biogenesis protein RLP24