IL_7OOD_005

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAG*CUCAGAUC

Length

13 nucleotides

Bulged bases

7OOD|1|3|A|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_005 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.2746

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7OOD|1|3|G|83
7OOD|1|3|G|84
7OOD|1|3|U|85
7OOD|1|3|A|86
7OOD|1|3|G|87
*
7OOD|1|3|C|99
7OOD|1|3|U|100
7OOD|1|3|C|101
7OOD|1|3|A|102
7OOD|1|3|G|103
7OOD|1|3|A|104
7OOD|1|3|U|105
7OOD|1|3|C|106

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L24

Chain w

50S ribosomal protein L29