IL_7OOD_032

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAAG*CGAAU

Length

10 nucleotides

Bulged bases

7OOD|1|3|A|1191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_032 not in the Motif Atlas

Geometric match to IL_4WF9_036

Geometric discrepancy: 0.1743

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

7OOD|1|3|A|1034
7OOD|1|3|U|1035
7OOD|1|3|A|1036
7OOD|1|3|A|1037
7OOD|1|3|G|1038
*
7OOD|1|3|C|1188
7OOD|1|3|G|1189
7OOD|1|3|A|1190
7OOD|1|3|A|1191
7OOD|1|3|U|1192

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21