IL_7OOD_034

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAGUG*CUAAG

Length

12 nucleotides

Bulged bases

7OOD|1|3|A|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_034 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1193

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7OOD|1|3|C|1053
7OOD|1|3|U|1054
7OOD|1|3|A|1055
7OOD|1|3|A|1056
7OOD|1|3|G|1057
7OOD|1|3|U|1058
7OOD|1|3|G|1059
*
7OOD|1|3|C|1175
7OOD|1|3|U|1176
7OOD|1|3|A|1177
7OOD|1|3|A|1178
7OOD|1|3|G|1179

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain i

50S ribosomal protein L13