IL_7OOD_041

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGUUGAAG*UGGAU

Length

13 nucleotides

Bulged bases

7OOD|1|3|U|1241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_041 not in the Motif Atlas

Geometric match to IL_4V9F_048

Geometric discrepancy: 0.122

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

7OOD|1|3|A|1238
7OOD|1|3|G|1239
7OOD|1|3|U|1240
7OOD|1|3|U|1241
7OOD|1|3|G|1242
7OOD|1|3|A|1243
7OOD|1|3|A|1244
7OOD|1|3|G|1245
*
7OOD|1|3|U|1264
7OOD|1|3|G|1265
7OOD|1|3|G|1266
7OOD|1|3|A|1267
7OOD|1|3|U|1268

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22