IL_7OOD_067

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAA*UGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_067 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.316

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7OOD|1|3|G|1857
7OOD|1|3|U|1858
7OOD|1|3|U|1859
7OOD|1|3|A|1860
7OOD|1|3|A|1861
7OOD|1|3|A|1862
*
7OOD|1|3|U|1894
7OOD|1|3|G|1895
7OOD|1|3|A|1896
7OOD|1|3|A|1897
7OOD|1|3|G|1898
7OOD|1|3|C|1899

Current chains

Chain 3

23S ribosomal RNA

Nearby chains