IL_7OOD_071

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAUUCCUAG*CCCG

Length

16 nucleotides

Bulged bases

7OOD|1|3|A|1945, 7OOD|1|3|A|1951, 7OOD|1|3|C|1970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_071 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.2145

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

7OOD|1|3|C|1941
7OOD|1|3|G|1942
7OOD|1|3|A|1943
7OOD|1|3|A|1944
7OOD|1|3|A|1945
7OOD|1|3|U|1946
7OOD|1|3|U|1947
7OOD|1|3|C|1948
7OOD|1|3|C|1949
7OOD|1|3|U|1950
7OOD|1|3|A|1951
7OOD|1|3|G|1952
*
7OOD|1|3|C|1968
7OOD|1|3|C|1969
7OOD|1|3|C|1970
7OOD|1|3|G|1971

Current chains

Chain 3

23S ribosomal RNA

Nearby chains