IL_7OSA_024

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

7OSA|1|18S|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_024 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.0717

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7OSA|1|18S|C|443
7OSA|1|18S|C|444
7OSA|1|18S|A|445
7OSA|1|18S|A|446
7OSA|1|18S|U|447
7OSA|1|18S|C|448
*
7OSA|1|18S|G|458
7OSA|1|18S|G|459
7OSA|1|18S|A|460
7OSA|1|18S|G|461

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS24

40S ribosomal protein S24

Chain eS4

40S ribosomal protein S4

Chain uS4

BJ4_G0026100.mRNA.1.CDS.1