3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AG*CAUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSA_039 not in the Motif Atlas
Homologous match to IL_8P9A_417
Geometric discrepancy: 0.1205
The information below is about IL_8P9A_417
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

7OSA|1|18S|A|865
7OSA|1|18S|G|866
*
7OSA|1|18S|C|962
7OSA|1|18S|A|963
7OSA|1|18S|U|964
7OSA|1|18S|U|965

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS27
40S ribosomal protein S27-A
Chain uS15
40S ribosomal protein S13
Chain uS8
40S ribosomal protein S22-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1376 s