IL_7OSA_040

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

7OSA|1|18S|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_040 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.08

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7OSA|1|18S|G|868
7OSA|1|18S|A|869
7OSA|1|18S|C|870
*
7OSA|1|18S|G|957
7OSA|1|18S|U|958
7OSA|1|18S|U|959
7OSA|1|18S|U|960

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS27

40S ribosomal protein S27-A

Chain uS15

40S ribosomal protein S13