IL_7OSA_142
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 7OSA|1|25S|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSA_142 not in the Motif Atlas
- Homologous match to IL_8P9A_287
- Geometric discrepancy: 0.0898
- The information below is about IL_8P9A_287
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
7OSA|1|25S|U|1388
7OSA|1|25S|G|1389
7OSA|1|25S|A|1390
7OSA|1|25S|C|1391
7OSA|1|25S|G|1392
7OSA|1|25S|A|1393
7OSA|1|25S|A|1394
7OSA|1|25S|G|1395
*
7OSA|1|25S|U|1415
7OSA|1|25S|C|1416
7OSA|1|25S|G|1417
7OSA|1|25S|A|1418
7OSA|1|25S|A|1419
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain 58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain eL32
- HN1_G0013350.mRNA.1.CDS.1
- Chain eL6
- 60S ribosomal protein L6
- Chain uL22
- BJ4_G0005750.mRNA.1.CDS.1
- Chain uL24
- 60S ribosomal protein L26-A
- Chain uL4
- BJ4_G0008850.mRNA.1.CDS.1
Coloring options: