IL_7OSM_009

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

7OSM|1|18S|C|114, 7OSM|1|18S|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_009 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1317

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7OSM|1|18S|U|113
7OSM|1|18S|C|114
7OSM|1|18S|G|115
7OSM|1|18S|U|116
*
7OSM|1|18S|A|300
7OSM|1|18S|A|301

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS4

40S ribosomal protein S4

Chain eS8

40S ribosomal protein S8

Chain uS17

40S ribosomal protein S11-B