IL_7OSM_017

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

7OSM|1|18S|U|313, 7OSM|1|18S|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_017 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0808

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7OSM|1|18S|U|311
7OSM|1|18S|A|312
7OSM|1|18S|U|313
7OSM|1|18S|C|314
7OSM|1|18S|A|315
7OSM|1|18S|A|316
*
7OSM|1|18S|U|348
7OSM|1|18S|U|349
7OSM|1|18S|U|350
7OSM|1|18S|C|351
7OSM|1|18S|A|352
7OSM|1|18S|A|353
7OSM|1|18S|C|354
7OSM|1|18S|G|355

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS8

40S ribosomal protein S8

Chain uS12

40S ribosomal protein S23

Chain uS17

40S ribosomal protein S11-B