3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUUAAAA*UC
Length
9 nucleotides
Bulged bases
7OSM|1|18S|A|619
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_031 not in the Motif Atlas
Homologous match to IL_4V88_416
Geometric discrepancy: 0.1464
The information below is about IL_4V88_416
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.3
Basepair signature
cWW-L-cWW-R-L-R
Number of instances in this motif group
5

Unit IDs

7OSM|1|18S|G|616
7OSM|1|18S|U|617
7OSM|1|18S|U|618
7OSM|1|18S|A|619
7OSM|1|18S|A|620
7OSM|1|18S|A|621
7OSM|1|18S|A|622
*
7OSM|1|18S|U|1104
7OSM|1|18S|C|1105

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS26
40S ribosomal protein S26
Chain uS12
40S ribosomal protein S23

Coloring options:


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