IL_7OSM_033
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSM_033 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1115
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7OSM|1|18S|C|627
7OSM|1|18S|G|628
7OSM|1|18S|U|629
7OSM|1|18S|A|630
7OSM|1|18S|G|631
*
7OSM|1|18S|U|968
7OSM|1|18S|C|969
7OSM|1|18S|A|970
7OSM|1|18S|A|971
7OSM|1|18S|G|972
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain 25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain uS12
- 40S ribosomal protein S23
- Chain uS15
- 40S ribosomal protein S13
- Chain uS17
- 40S ribosomal protein S11-B
- Chain uS8
- 40S ribosomal protein S22-A
Coloring options: