IL_7OSM_039
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACGUUUG*CAUCGU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSM_039 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3801
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OSM|1|18S|A|817
7OSM|1|18S|C|818
7OSM|1|18S|G|819
7OSM|1|18S|U|820
7OSM|1|18S|U|821
7OSM|1|18S|U|822
7OSM|1|18S|G|823
*
7OSM|1|18S|C|849
7OSM|1|18S|A|850
7OSM|1|18S|U|851
7OSM|1|18S|C|852
7OSM|1|18S|G|853
7OSM|1|18S|U|854
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain eL19
- 60S ribosomal protein L19-A
- Chain eS7
- 40S ribosomal protein S7
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