IL_7OSM_116

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

7OSM|1|25S|G|908, 7OSM|1|25S|A|920, 7OSM|1|25S|A|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_116 not in the Motif Atlas

Geometric match to IL_5TBW_033

Geometric discrepancy: 0.1087

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7OSM|1|25S|G|907
7OSM|1|25S|G|908
7OSM|1|25S|G|909
*
7OSM|1|25S|U|919
7OSM|1|25S|A|920
7OSM|1|25S|A|921
7OSM|1|25S|U|922
7OSM|1|25S|C|923

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL15

60S ribosomal protein L15-A

Chain eL37

Ribosomal protein L37

Chain uL2

60S ribosomal protein L2-B

Chain uL22

BJ4_G0005750.mRNA.1.CDS.1