IL_7OSM_129

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAG*CUAUA

Length

10 nucleotides

Bulged bases

7OSM|1|25S|U|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_129 not in the Motif Atlas

Homologous match to IL_5TBW_048

Geometric discrepancy: 0.1139

The information below is about IL_5TBW_048

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

7OSM|1|25S|U|1167
7OSM|1|25S|U|1168
7OSM|1|25S|A|1169
7OSM|1|25S|A|1170
7OSM|1|25S|G|1171
*
7OSM|1|25S|C|1328
7OSM|1|25S|U|1329
7OSM|1|25S|A|1330
7OSM|1|25S|U|1331
7OSM|1|25S|A|1332

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain eL18

BJ4_G0033900.mRNA.1.CDS.1

Chain eL32

HN1_G0013350.mRNA.1.CDS.1

Chain eL33

BJ4_G0025510.mRNA.1.CDS.1

Chain uL30

60S ribosomal protein L7-A