IL_7OSM_135

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7OSM|1|25S|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_135 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.1635

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7OSM|1|25S|U|1218
7OSM|1|25S|C|1219
7OSM|1|25S|U|1220
7OSM|1|25S|A|1221
7OSM|1|25S|G|1222
7OSM|1|25S|A|1223
7OSM|1|25S|C|1224
7OSM|1|25S|A|1225
7OSM|1|25S|G|1226
*
7OSM|1|25S|C|1283
7OSM|1|25S|C|1284
7OSM|1|25S|G|1285
7OSM|1|25S|A|1286
7OSM|1|25S|A|1287

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL40

Ubiquitin

Chain uL10

60S acidic ribosomal protein P0