IL_7OSM_142

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_142 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0723

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7OSM|1|25S|G|1444
7OSM|1|25S|U|1445
7OSM|1|25S|A|1446
7OSM|1|25S|G|1447
7OSM|1|25S|U|1448
7OSM|1|25S|A|1449
7OSM|1|25S|G|1450
*
7OSM|1|25S|C|2354
7OSM|1|25S|G|2355
7OSM|1|25S|A|2356
7OSM|1|25S|A|2357
7OSM|1|25S|A|2358
7OSM|1|25S|C|2359

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 58S

5.8S ribosomal RNA; 5.8S rRNA

Chain uL22

BJ4_G0005750.mRNA.1.CDS.1

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1