IL_7OSM_143

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_143 not in the Motif Atlas

Homologous match to IL_5TBW_062

Geometric discrepancy: 0.1429

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7OSM|1|25S|G|1500
7OSM|1|25S|U|1501
7OSM|1|25S|C|1502
7OSM|1|25S|A|1503
7OSM|1|25S|A|1504
7OSM|1|25S|C|1505
*
7OSM|1|25S|G|1513
7OSM|1|25S|G|1514
7OSM|1|25S|A|1515
7OSM|1|25S|C|1516

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eL39

60S ribosomal protein L39

Chain uL22

BJ4_G0005750.mRNA.1.CDS.1