IL_7OSM_148

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_148 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1226

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7OSM|1|25S|U|1645
7OSM|1|25S|G|1646
7OSM|1|25S|A|1647
7OSM|1|25S|A|1648
7OSM|1|25S|U|1649
*
7OSM|1|25S|A|1806
7OSM|1|25S|G|1807
7OSM|1|25S|G|1808
7OSM|1|25S|A|1809
7OSM|1|25S|A|1810

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL27

60S ribosomal protein L27

Chain eL34

60S ribosomal protein L34-A

Chain uL2

60S ribosomal protein L2-B