3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AAUAAUG*CUAU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_155 not in the Motif Atlas
Homologous match to IL_8C3A_080
Geometric discrepancy: 0.1322
The information below is about IL_8C3A_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_49460.3
Basepair signature
cWW-L-R-L-R-L-cWW-L
Number of instances in this motif group
3

Unit IDs

7OSM|1|25S|A|1883
7OSM|1|25S|A|1884
7OSM|1|25S|U|1885
7OSM|1|25S|A|1886
7OSM|1|25S|A|1887
7OSM|1|25S|U|1888
7OSM|1|25S|G|1889
*
7OSM|1|25S|C|2346
7OSM|1|25S|U|2347
7OSM|1|25S|A|2348
7OSM|1|25S|U|2349

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL31
BJ4_G0008090.mRNA.1.CDS.1
Chain uL22
BJ4_G0005750.mRNA.1.CDS.1
Chain uL3
60S ribosomal protein L3

Coloring options:


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