3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAU*AGUAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_178 not in the Motif Atlas
Geometric match to IL_5TBW_099
Geometric discrepancy: 0.1918
The information below is about IL_5TBW_099
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_71241.2
Basepair signature
cWW-cWW-tSH-cWW-L-L
Number of instances in this motif group
7

Unit IDs

7OSM|1|25S|C|2666
7OSM|1|25S|A|2667
7OSM|1|25S|U|2668
*
7OSM|1|25S|A|2686
7OSM|1|25S|G|2687
7OSM|1|25S|U|2688
7OSM|1|25S|A|2689
7OSM|1|25S|G|2690

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain AB
5S ribosomal RNA; 5S rRNA
Chain ASIT
Transfer RNA; tRNA
Chain eL21
BJ4_G0003770.mRNA.1.CDS.1
Chain uL18
60S ribosomal protein L5
Chain uL5
BJ4_G0027750.mRNA.1.CDS.1

Coloring options:


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