IL_7OSM_178
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSM_178 not in the Motif Atlas
- Geometric match to IL_5TBW_099
- Geometric discrepancy: 0.1918
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
7OSM|1|25S|C|2666
7OSM|1|25S|A|2667
7OSM|1|25S|U|2668
*
7OSM|1|25S|A|2686
7OSM|1|25S|G|2687
7OSM|1|25S|U|2688
7OSM|1|25S|A|2689
7OSM|1|25S|G|2690
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain ASIT
- Transfer RNA; tRNA
- Chain eL21
- BJ4_G0003770.mRNA.1.CDS.1
- Chain uL18
- 60S ribosomal protein L5
- Chain uL5
- BJ4_G0027750.mRNA.1.CDS.1
Coloring options: