IL_7OSM_193

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7OSM|1|25S|A|3142, 7OSM|1|25S|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_193 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1013

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7OSM|1|25S|C|3004
7OSM|1|25S|A|3005
7OSM|1|25S|A|3006
7OSM|1|25S|U|3007
*
7OSM|1|25S|A|3139
7OSM|1|25S|G|3140
7OSM|1|25S|A|3141
7OSM|1|25S|A|3142
7OSM|1|25S|C|3143
7OSM|1|25S|G|3144

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 58S

5.8S ribosomal RNA; 5.8S rRNA

Chain uL13

60S ribosomal protein L16-A

Chain uL3

60S ribosomal protein L3