IL_7OSM_195
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSM_195 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.0935
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7OSM|1|25S|C|3018
7OSM|1|25S|U|3019
7OSM|1|25S|U|3020
7OSM|1|25S|A|3021
7OSM|1|25S|G|3022
7OSM|1|25S|U|3023
7OSM|1|25S|A|3024
7OSM|1|25S|C|3025
*
7OSM|1|25S|G|3030
7OSM|1|25S|G|3031
7OSM|1|25S|A|3032
7OSM|1|25S|A|3033
7OSM|1|25S|C|3034
7OSM|1|25S|A|3035
7OSM|1|25S|G|3036
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eEF2
- Elongation factor 2
- Chain eL40
- Ubiquitin
- Chain uL14
- 60S ribosomal protein L23-B
- Chain uL3
- 60S ribosomal protein L3
- Chain uL6
- 60S ribosomal protein L9-A
Coloring options: