IL_7OSM_196

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

7OSM|1|25S|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_196 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.1191

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

7OSM|1|25S|U|3047
7OSM|1|25S|A|3048
7OSM|1|25S|A|3049
7OSM|1|25S|U|3050
7OSM|1|25S|U|3051
*
7OSM|1|25S|A|3091
7OSM|1|25S|C|3092
7OSM|1|25S|C|3093
7OSM|1|25S|A|3094

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL24

60S ribosomal protein L24-A

Chain uL14

60S ribosomal protein L23-B

Chain uL3

60S ribosomal protein L3