IL_7OYD_057
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CCGGUAA*UAAAU(E7G)G
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: E7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_057 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.1505
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OYD|1|5|C|1735
7OYD|1|5|C|1736
7OYD|1|5|G|1737
7OYD|1|5|G|1738
7OYD|1|5|U|1739
7OYD|1|5|A|1740
7OYD|1|5|A|1741
*
7OYD|1|5|U|1796
7OYD|1|5|A|1797
7OYD|1|5|A|1798
7OYD|1|5|A|1799
7OYD|1|5|U|1800
7OYD|1|5|E7G|1801
7OYD|1|5|G|1802
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain F
- uL30
- Chain I
- 60S ribosomal protein L10
- Chain K
- 5S ribosomal RNA; 5S rRNA
- Chain S
- RPL18A
- Chain T
- eL21
Coloring options: