IL_7OYD_066
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_066 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1532
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|5|C|1915
7OYD|1|5|G|1916
7OYD|1|5|C|1917
7OYD|1|5|C|1918
7OYD|1|5|C|1919
7OYD|1|5|G|1920
7OYD|1|5|A|1921
7OYD|1|5|U|1922
*
7OYD|1|5|G|2068
7OYD|1|5|G|2069
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- uL30
- Chain O
- RPL13A
- Chain S
- RPL18A
- Chain f
- eL33
Coloring options: