IL_7OYD_069
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 7OYD|1|5|U|1934, 7OYD|1|5|C|1935, 7OYD|1|5|G|2059, 7OYD|1|5|A|2061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_069 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.1503
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|5|C|1930
7OYD|1|5|U|1931
7OYD|1|5|C|1932
7OYD|1|5|A|1933
7OYD|1|5|U|1934
7OYD|1|5|C|1935
7OYD|1|5|A|1936
7OYD|1|5|G|1937
*
7OYD|1|5|C|2057
7OYD|1|5|U|2058
7OYD|1|5|G|2059
7OYD|1|5|G|2060
7OYD|1|5|A|2061
7OYD|1|5|G|2062
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- RPL13A
- Chain S
- RPL18A
- Chain m
- RPL40
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