IL_7OYD_072

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7OYD|1|5|A|1964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_072 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2515

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7OYD|1|5|U|1961
7OYD|1|5|A|1962
7OYD|1|5|U|1963
7OYD|1|5|A|1964
7OYD|1|5|G|1965
7OYD|1|5|A|1966
7OYD|1|5|C|1967
7OYD|1|5|A|1968
7OYD|1|5|G|1969
*
7OYD|1|5|C|2026
7OYD|1|5|C|2027
7OYD|1|5|G|2028
7OYD|1|5|A|2029
7OYD|1|5|A|2030

Current chains

Chain 5

28S rRNA

Nearby chains

Chain m

RPL40

Chain s

RPLP0