3D structure

PDB id
7OYD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
ACG*CU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OYD_083 not in the Motif Atlas
Geometric match to IL_4V83_236
Geometric discrepancy: 0.325
The information below is about IL_4V83_236
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

7OYD|1|5|A|2481
7OYD|1|5|C|2482
7OYD|1|5|G|2483
*
7OYD|1|5|C|2503
7OYD|1|5|U|2504

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain X
RPL23A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3916 s