IL_7OYD_093
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_093 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.0971
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7OYD|1|5|A|2836
7OYD|1|5|A|2837
7OYD|1|5|C|2838
7OYD|1|5|A|2839
7OYD|1|5|A|2840
7OYD|1|5|U|2841
7OYD|1|5|G|2842
*
7OYD|1|5|C|3854
7OYD|1|5|U|3855
7OYD|1|5|A|3856
7OYD|1|5|U|3857
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain P
- 60S ribosomal protein L17
- Chain d
- eL31
Coloring options: