IL_7OYD_101
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 7OYD|1|5|A|3667, 7OYD|1|5|U|3683, 7OYD|1|5|C|3687
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_101 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0934
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|5|C|3664
7OYD|1|5|G|3665
7OYD|1|5|A|3666
7OYD|1|5|A|3667
7OYD|1|5|G|3668
7OYD|1|5|G|3669
*
7OYD|1|5|U|3681
7OYD|1|5|G|3682
7OYD|1|5|U|3683
7OYD|1|5|U|3684
7OYD|1|5|G|3685
7OYD|1|5|A|3686
7OYD|1|5|C|3687
7OYD|1|5|G|3688
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Ribosomal protein L8
- Chain p
- eL43
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