IL_7OYD_119
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- U(B8H)GA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_119 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.2598
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7OYD|1|5|U|4299
7OYD|1|5|B8H|4300
7OYD|1|5|G|4301
7OYD|1|5|A|4302
*
7OYD|1|5|U|4316
7OYD|1|5|A|4317
7OYD|1|5|C|4318
7OYD|1|5|A|4319
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain Q
- RPL18
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
- Chain o
- RPL36A
Coloring options: