IL_7OYD_134
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- C(UR3)CAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_134 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.0907
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7OYD|1|5|C|4600
7OYD|1|5|UR3|4601
7OYD|1|5|C|4602
7OYD|1|5|A|4603
7OYD|1|5|G|4604
7OYD|1|5|U|4605
7OYD|1|5|A|4606
7OYD|1|5|C|4607
*
7OYD|1|5|G|4612
7OYD|1|5|G|4613
7OYD|1|5|A|4614
7OYD|1|5|A|4615
7OYD|1|5|C|4616
7OYD|1|5|C|4617
7OYD|1|5|G|4618
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain H
- 60S ribosomal protein L9
- Chain V
- Ribosomal protein L23
- Chain m
- RPL40
- Chain v
- EEF2
Coloring options: