IL_7OYD_148

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

7OYD|1|5|G|5053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_148 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.2082

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7OYD|1|5|G|5004
7OYD|1|5|U|5005
7OYD|1|5|U|5006
*
7OYD|1|5|G|5049
7OYD|1|5|U|5050
7OYD|1|5|C|5051
7OYD|1|5|A|5052
7OYD|1|5|G|5053
7OYD|1|5|C|5054

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain d

eL31