IL_7OYD_190
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_190 not in the Motif Atlas
- Geometric match to IL_4V88_418
- Geometric discrepancy: 0.1182
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7OYD|1|9|C|676
7OYD|1|9|G|677
7OYD|1|9|U|678
7OYD|1|9|A|679
7OYD|1|9|G|680
*
7OYD|1|9|U|1025
7OYD|1|9|C|1026
7OYD|1|9|A|1027
7OYD|1|9|A|1028
7OYD|1|9|G|1029
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- 40S ribosomal protein S11
- Chain NN
- uS15
- Chain WW
- Ribosomal protein S15a
- Chain XX
- RPS23
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