IL_7OYD_203
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_203 not in the Motif Atlas
- Geometric match to IL_4V88_432
- Geometric discrepancy: 0.1113
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7OYD|1|9|G|942
7OYD|1|9|U|943
7OYD|1|9|A|944
7OYD|1|9|U|945
*
7OYD|1|9|A|981
7OYD|1|9|G|982
7OYD|1|9|A|983
7OYD|1|9|C|984
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain Aa
- RPS26
- Chain BB
- 40S ribosomal protein S3a
- Chain OO
- RPS14
- Chain p
- eL43
Coloring options: