IL_7OYD_214

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

7OYD|1|9|C|1215, 7OYD|1|9|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_214 not in the Motif Atlas

Geometric match to IL_4V88_443

Geometric discrepancy: 0.1806

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

7OYD|1|9|A|1214
7OYD|1|9|C|1215
7OYD|1|9|C|1216
7OYD|1|9|A|1217
*
7OYD|1|9|U|1681
7OYD|1|9|C|1682
7OYD|1|9|C|1683
7OYD|1|9|C|1684
7OYD|1|9|U|1685

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

RPS26

Chain Cc

Ribosomal protein S28

Chain QQ

Ribosomal protein S16