IL_7OYD_266
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUAA(P7G)*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 7OYD|1|5|U|2074
- QA status
- Modified nucleotides: P7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_266 not in the Motif Atlas
- Homologous match to IL_8P9A_276
- Geometric discrepancy: 0.1063
- The information below is about IL_8P9A_276
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
7OYD|1|5|U|1909
7OYD|1|5|U|1910
7OYD|1|5|A|1911
7OYD|1|5|A|1912
7OYD|1|5|P7G|1913
*
7OYD|1|5|C|2071
7OYD|1|5|C|2072
7OYD|1|5|A|2073
7OYD|1|5|U|2074
7OYD|1|5|A|2075
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- uL30
- Chain K
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- RPL18
- Chain e
- eL32
- Chain f
- eL33
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