IL_7P7U_141

3D structure

PDB id

7P7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome with P-tRNA, state IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAAGCC*GAGGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7U_141 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.2302

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7P7U|1|a|U|631
7P7U|1|a|G|632
7P7U|1|a|A|633
7P7U|1|a|A|634
7P7U|1|a|A|635
7P7U|1|a|G|636
7P7U|1|a|C|637
7P7U|1|a|C|638
*
7P7U|1|a|G|654
7P7U|1|a|A|655
7P7U|1|a|G|656
7P7U|1|a|G|657
7P7U|1|a|G|658

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain i

30S ribosomal protein S8

Chain q

30S ribosomal protein S16