IL_7PHC_005

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGUAG*CUCAGAUC

Length

13 nucleotides

Bulged bases

7PHC|1|3|A|102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_005 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.3012

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7PHC|1|3|G|83
7PHC|1|3|G|84
7PHC|1|3|U|85
7PHC|1|3|A|86
7PHC|1|3|G|87
*
7PHC|1|3|C|99
7PHC|1|3|U|100
7PHC|1|3|C|101
7PHC|1|3|A|102
7PHC|1|3|G|103
7PHC|1|3|A|104
7PHC|1|3|U|105
7PHC|1|3|C|106

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L24

Chain w

50S ribosomal protein L29